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Biblio

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FOLDX PAPERS

Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, et al. "Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation." Mol Syst Biol. 2023;19(1):e11037.
Sapozhnikov Y, Patel JSuresh, F Ytreberg M, Miller CR. "Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability." BMC Bioinformatics. 2023;24(1):426.
Biswas G, Mukherjee D, Dutta N, Ghosh P, Basu S. "EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations." J Mol Model. 2023;29(8):239.
Jia D-X, Yu H, Wang F, Jin L-Q, Liu Z-Q, Zheng Y-G. "Computer-aided design of novel cellobiose 2-epimerase for efficient synthesis of lactulose using lactose." Bioprocess Biosyst Eng. 2023;46(9):1279-1291.
Le J, Min J-H. "Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein." J Biomol Struct Dyn. 2023:1-28.
Junk P, Kiel C. "Structure-based prediction of Ras-effector binding affinities and design of "branchegetic" interface mutations." Structure. 2023;31(7):870-883.e5.
Liu N, Xiao H, Zang Y, et al. "Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A." Int J Mol Sci. 2023;24(23).
Janssen K, Duran-Romaña R, Bottu G, et al. "SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models." BMC Bioinformatics. 2023;24(1):287.
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D. "Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment." PLoS Comput Biol. 2023;19(11):e1011621.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N. "In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy." J Immunol Methods. 2023;513:113425.
Xue Y, Zhao Y, Wu B, et al. "A novel variant in ALG1 gene associated with congenital disorder of glycosylation: A case report and short literature review." Mol Genet Genomic Med. 2023;11(8):e2197.
Ming Y, Zhang H, Zhao Z, Zhang Z, Wang H, Liang Z. "Enhancing the thermostability of carboxypeptidase A by a multiple computer-aided rational design based on amino acids preferences at β-turns." Int J Biol Macromol. 2023;245:125447.
Gerasimavicius L, Livesey BJ, Marsh JA. "Correspondence between functional scores from deep mutational scans and predicted effects on protein stability." Protein Sci. 2023;32(7):e4688.
M DDarshan V, Sivaramakrishnan V, K Kumar A. "Structural systems biology approach delineate the functional implications of SNPs in exon junction complex interaction network." J Biomol Struct Dyn. 2023:1-18.
Paul R, Kasahara K, Sasaki J, et al. "Unveiling the affinity-stability relationship in anti-measles virus antibodies: a computational approach for hotspots prediction." Front Mol Biosci. 2023;10:1302737.
Li Z, Zhao C, Li D, Wang L. "Enhancing the thermostability of Streptomyces cyaneofuscatus strain Ms1 tyrosinase by multi-factors rational design and molecular dynamics simulations." PLoS One. 2023;18(7):e0288929.
Li S, Patel JSuresh, Yang J, et al. "Defining the HIV Capsid Binding Site of Nucleoporin 153." mSphere. 2022;7(5):e0031022.

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