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Biblio

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FOLDX PAPERS

Cardama GA, Bucci PL, Lemos JS, et al. "In Silico and In Vitro Evaluation of Bevacizumab Biosimilar MB02 as an Antitumor Agent in Canine Mammary Carcinoma." Animals (Basel). 2023;13(15).
Petrovskiy DV, Nikolsky KS, Rudnev VR, et al. "Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications." Int J Mol Sci. 2023;24(17).
Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, et al. "Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation." Mol Syst Biol. 2023;19(1):e11037.
Sapozhnikov Y, Patel JSuresh, F Ytreberg M, Miller CR. "Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability." BMC Bioinformatics. 2023;24(1):426.
Biswas G, Mukherjee D, Dutta N, Ghosh P, Basu S. "EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations." J Mol Model. 2023;29(8):239.
Jia D-X, Yu H, Wang F, Jin L-Q, Liu Z-Q, Zheng Y-G. "Computer-aided design of novel cellobiose 2-epimerase for efficient synthesis of lactulose using lactose." Bioprocess Biosyst Eng. 2023;46(9):1279-1291.
Le J, Min J-H. "Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein." J Biomol Struct Dyn. 2023:1-28.
Junk P, Kiel C. "Structure-based prediction of Ras-effector binding affinities and design of "branchegetic" interface mutations." Structure. 2023;31(7):870-883.e5.
Liu N, Xiao H, Zang Y, et al. "Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A." Int J Mol Sci. 2023;24(23).
Janssen K, Duran-Romaña R, Bottu G, et al. "SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models." BMC Bioinformatics. 2023;24(1):287.
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D. "Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment." PLoS Comput Biol. 2023;19(11):e1011621.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N. "In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy." J Immunol Methods. 2023;513:113425.
Xue Y, Zhao Y, Wu B, et al. "A novel variant in ALG1 gene associated with congenital disorder of glycosylation: A case report and short literature review." Mol Genet Genomic Med. 2023;11(8):e2197.
Ming Y, Zhang H, Zhao Z, Zhang Z, Wang H, Liang Z. "Enhancing the thermostability of carboxypeptidase A by a multiple computer-aided rational design based on amino acids preferences at β-turns." Int J Biol Macromol. 2023;245:125447.
Gerasimavicius L, Livesey BJ, Marsh JA. "Correspondence between functional scores from deep mutational scans and predicted effects on protein stability." Protein Sci. 2023;32(7):e4688.
M DDarshan V, Sivaramakrishnan V, K Kumar A. "Structural systems biology approach delineate the functional implications of SNPs in exon junction complex interaction network." J Biomol Struct Dyn. 2023:1-18.
Wang Y, Li C, Ban X, et al. "Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from STB07." Foods. 2022;11(9).

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