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Biblio

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FOLDX PAPERS

Parvar SJamshidi, Hall BA, Shorthouse D. "Interpreting the effect of mutations to protein binding sites from large-scale genomic screens." Methods. 2024;222:122-132.
Darshan VMDatta, Arumugam N, Almansour AI, Sivaramakrishnan V, Kanchi S. "In silico energetic and molecular dynamic simulations studies demonstrate potential effect of the point mutations with implications for protein engineering in BDNF." Int J Biol Macromol. 2024:132247.
Wu X, Hone AJ, Huang Y-H, et al. "Computational Design of α-Conotoxins to Target Specific Nicotinic Acetylcholine Receptor Subtypes." Chemistry. 2024;30(7):e202302909.
G Sankari S, James R, Payva F, et al. "Computational analysis of sodium-dependent phosphate transporter SLC20A1/PiT1 gene identifies missense variations C573F, and T58A as high-risk deleterious SNPs." J Biomol Struct Dyn. 2024;42(8):4072-4086.
Xu S-Y, Chu R-L, Liu H-T, Weng C-Y, Wang Y-J, Zheng Y-G. "Computer-directed rational design enhanced the thermostability of carbonyl reductase LsCR for the synthesis of ticagrelor precursor." Biotechnol Bioeng. 2024;121(5):1532-1542.
Lyu Q, Lin Y, Pan Y, et al. "The polymorphism analysis for CD36 among platelet donors." Sci Rep. 2024;14(1):8534.
Fan S, Lü X, Wei X, et al. "Computational design of α-amylase from to increase its activity and stability at high temperatures." Comput Struct Biotechnol J. 2024;23:982-989.
Huang A, Chen Z, Wu X, Yan W, Lu F, Liu F. "Improving the thermal stability and catalytic activity of ulvan lyase by the combination of FoldX and KnowVolution campaign." Int J Biol Macromol. 2024;257(Pt 1):128577.
Ozden B, amiloğlu EŞ, zsan AÖ, et al. "Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set." Proteins. 2024;92(4):529-539.
Goettig P, Chen X, Harris JM. "Correlation of Experimental and Calculated Inhibition Constants of Protease Inhibitor Complexes." Int J Mol Sci. 2024;25(4).
Mamata M, Padma G, T Laxmi P, Saroja K, Ashwin D, Suman J. "Identification of a Novel Variant in Gene Resulting in a Beta Null Phenotype in a Proband with Thalassemia Intermedia." Hemoglobin. 2024;48(1):1-3.
Junk P, Kiel C. "Structure-based prediction of Ras-effector binding affinities and design of "branchegetic" interface mutations." Structure. 2023;31(7):870-883.e5.
Janssen K, Duran-Romaña R, Bottu G, et al. "SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models." BMC Bioinformatics. 2023;24(1):287.
Liu N, Xiao H, Zang Y, et al. "Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A." Int J Mol Sci. 2023;24(23).
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D. "Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment." PLoS Comput Biol. 2023;19(11):e1011621.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N. "In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy." J Immunol Methods. 2023;513:113425.
Ming Y, Zhang H, Zhao Z, Zhang Z, Wang H, Liang Z. "Enhancing the thermostability of carboxypeptidase A by a multiple computer-aided rational design based on amino acids preferences at β-turns." Int J Biol Macromol. 2023;245:125447.

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