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Biblio

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FOLDX PAPERS

Koşaca M, Yılmazbilek İ, Karaca E. "PROT-ON: A structure-based detection of designer PROTein interface MutatiONs." Front Mol Biosci. 2023;10:1063971.
Hajihassan Z, Saray MMohammadpo, Yaseri A. "Engineering a CEACAM1 Variant with the Increased Binding Affinity to TIM-3 Receptor." Iran Biomed J. 2023;27(4):191-8.
Liu Y, Sheng W, Hou S, et al. "Functional Characterization of a Novel SLC4A4 Variant and Uniparental Isodisomy in Proximal Renal Tubular Acidosis Patient." Biochem Genet. 2023.
Hong X, Lv J, Li Z, Xiong Y, Zhang J, Chen H-F. "Sequence-based machine learning method for predicting the effects of phosphorylation on protein-protein interactions." Int J Biol Macromol. 2023;243:125233.
Cardama GA, Bucci PL, Lemos JS, et al. "In Silico and In Vitro Evaluation of Bevacizumab Biosimilar MB02 as an Antitumor Agent in Canine Mammary Carcinoma." Animals (Basel). 2023;13(15).
Petrovskiy DV, Nikolsky KS, Rudnev VR, et al. "Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications." Int J Mol Sci. 2023;24(17).
Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, et al. "Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation." Mol Syst Biol. 2023;19(1):e11037.
Sapozhnikov Y, Patel JSuresh, F Ytreberg M, Miller CR. "Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability." BMC Bioinformatics. 2023;24(1):426.
Biswas G, Mukherjee D, Dutta N, Ghosh P, Basu S. "EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations." J Mol Model. 2023;29(8):239.
Jia D-X, Yu H, Wang F, Jin L-Q, Liu Z-Q, Zheng Y-G. "Computer-aided design of novel cellobiose 2-epimerase for efficient synthesis of lactulose using lactose." Bioprocess Biosyst Eng. 2023;46(9):1279-1291.
Le J, Min J-H. "Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein." J Biomol Struct Dyn. 2023:1-28.
Junk P, Kiel C. "Structure-based prediction of Ras-effector binding affinities and design of "branchegetic" interface mutations." Structure. 2023;31(7):870-883.e5.
Liu N, Xiao H, Zang Y, et al. "Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A." Int J Mol Sci. 2023;24(23).
Janssen K, Duran-Romaña R, Bottu G, et al. "SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models." BMC Bioinformatics. 2023;24(1):287.
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D. "Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment." PLoS Comput Biol. 2023;19(11):e1011621.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N. "In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy." J Immunol Methods. 2023;513:113425.
Standley M, Blay V, Guthrie VBeleva, et al. "Experimental and Analysis of TEM β-Lactamase Adaptive Evolution." ACS Infect Dis. 2022;8(12):2451-2463.

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