out-pdb

The option out-pdb is setted to true by default. For any of the mutations you carried out you will get a PDB for the WT reference and another one for the mutant both numerated from 0 to .....X.

PDB INPUT

WT

MUTANT

1aay.pdb

WT_1aay_0.pdb, 

WT_1aay_1.pdb...

1aay_0.pdb,

1aay_1.pdb...

1aay.pdb

(numberOfRuns=2)

WT_1aay_0_0.pdb,WT_1aay_0_1.pdb,

WT_1aay_1_0.pdb,WT_1aay_1_1.pdb...

WT_1aay_0_0.pdb,WT_1aay_0_1.pdb,

WT_1aay_1_0.pdb,WT_1aay_1_1.pdb...

parameter Description Type Default Value
out-pdb set to output PDBs when doing mutations bool true