Biblio

Found 150 results
2017
Carlin DAlexander, Hapig-Ward S, Chan BWayne, Damrau N, Riley M, Caster RW, Bethards B, Siegel JB.  2017.  Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designed.. PLoS One. 12(5):e0176255.
2016
Sirin S, Apgar JR, Bennett EM, Keating AE.  2016.  AB-Bind: Antibody binding mutational database for computational affinity predictions.. Protein Sci. 25(2):393-409.
Sulea T, Vivcharuk V, Corbeil CR, Deprez C, Purisima EO.  2016.  Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities.. J Chem Inf Model. 56(7):1292-303.
Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL.  2016.  Biological function derived from predicted structures in CASP11.. Proteins. 84 Suppl 1:370-91.
Luo X-J, Zhao J, Li C-X, Bai Y-P, Reetz MT, Yu H-L, Xu J-H.  2016.  Combinatorial evolution of phosphotriesterase toward a robust malathion degrader by hierarchical iteration mutagenesis.. Biotechnol Bioeng. 113(11):2350-7.
Kowalsky CA, Whitehead TA.  2016.  Determination of binding affinity upon mutation for type I dockerin-cohesin complexes from Clostridium thermocellum and Clostridium cellulolyticum using deep sequencing.. Proteins. 84(12):1914-1928.
Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, F Ytreberg M.  2016.  Initiating a watch list for Ebola virus antibody escape mutations.. PeerJ. 4:e1674.
Nygaard M, Terkelsen T, Olsen AVidas, Sora V, Viloria JSalamanca, Rizza F, Bergstrand-Poulsen S, Di Marco M, Vistesen M, Tiberti M et al..  2016.  The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.. Front Mol Biosci. 3:78.
Tomar JSingh, Peddinti RKrishna.  2016.  Optimized method for TAG protein homology modeling: In silico and experimental structural characterization.. Int J Biol Macromol. 88:102-12.
Van Durme J, De Baets G, Van Der Kant R, Ramakers M, Ganesan A, Wilkinson H, Gallardo R, Rousseau F, Schymkowitz J.  2016.  Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.
2015
Liu Q, Ren J, Song J, Li J.  2015.  Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
Hashmi I, Shehu A.  2015.  idDock+: Integrating Machine Learning in Probabilistic Search for Protein-Protein Docking.. J Comput Biol. 22(9):806-22.
Heselpoth RD, Yin Y, Moult J, Nelson DC.  2015.  Increasing the stability of the bacteriophage endolysin PlyC using rationale-based FoldX computational modeling.. Protein Eng Des Sel. 28(4):85-92.
Wettstein S, Underhaug J, Perez B, Marsden BD, Yue WW, Martinez A, Blau N.  2015.  Linking genotypes database with locus-specific database and genotype-phenotype correlation in phenylketonuria.. Eur J Hum Genet. 23(3):302-9.
Yu H, Wang M-jun, Xuan N-xia, Shang Z-cai, Wu J.  2015.  Molecular dynamics simulation of the interactions between EHD1 EH domain and multiple peptides.. J Zhejiang Univ Sci B. 16(10):883-96.
Singh I, Nunia V, Sharma R, Barupal J, Govindaraj P, Jain R, Gupta GN, Goyal PK.  2015.  Mutational analysis of telomere complex genes in Indian population with acquired aplastic anemia.. Leuk Res.
erný JČ, Biedermannová L, Mikulecký P, Zahradník J, Charnavets T, ebo PŠ, Schneider B.  2015.  Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model.. Biomed Res Int. 2015:716945.
2014
McKeone R, Wikstrom M, Kiel C, Rakoczy EP.  2014.  Assessing the correlation between mutant rhodopsin stability and the severity of retinitis pigmentosa.. Mol Vis. 20:183-99.
Xi Y, Wu X, Gao L, Shao Y, Peng H, Chen H, Chen H, Hu X, Yue J.  2014.  Improving the anti-toxin abilities of the CMG2-Fc fusion protein with the aid of computational design.. PLoS One. 9(8):e104674.
Liu Q, Hoi SCH, Kwoh CKeong, Wong L, Li J.  2014.  Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots.. BMC Bioinformatics. 15:57.
Kiel C, Serrano L.  2014.  Structure-energy-based predictions and network modelling of RASopathy and cancer missense mutations.. Mol Syst Biol. 10:727.
2012
Kimberley FC, van der Sloot AM, Guadagnoli M, Cameron K, Schneider P, Marquart AJ, Versloot M, Serrano L, Medema J P.  2012.  The design and characterization of receptor-selective APRIL variants.. J Biol Chem. 287(44):37434-46.
Simões-Correia J, Figueiredo J, Lopes R, Stricher F, Oliveira C, Serrano L, Seruca R.  2012.  E-cadherin destabilization accounts for the pathogenicity of missense mutations in hereditary diffuse gastric cancer.. PLoS One. 7(3):e33783.
De Baets G, Van Durme J, Reumers J, Maurer-Stroh S, Vanhee P, Dopazo J, Schymkowitz J, Rousseau F.  2012.  SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants.. Nucleic Acids Res. 40(Database issue):D935-9.
2011
Vanhee P, Verschueren E, Baeten L, Stricher F, Serrano L, Rousseau F, Schymkowitz J.  2011.  BriX: a database of protein building blocks for structural analysis, modeling and design.. Nucleic Acids Res. 39(Database issue):D435-42.