Biblio

Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, Lastrucci C, Piñero-Lambea C, Lluch-Senar M, Serrano L.  2023.  Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.. Mol Syst Biol. 19(1):e11037.

Hajihassan Z, Afsharian NPesaran, Ansari-Pour N.  2023.  In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy.. J Immunol Methods. 513:113425.

Liu Y-Y, Lin I-C, Chen P-C, Lee C-C, Meng M.  2022.  Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides.. Int J Biol Macromol. 222(Pt B):2258-2269.

Li S, Patel JSuresh, Yang J, Crabtree AMarie, Rubenstein BMarilyn, Lund-Andersen PKarl, Ytreberg FMarty, Rowley PAndrew.  2022.  Defining the HIV Capsid Binding Site of Nucleoporin 153.. mSphere. 7(5):e0031022.

Barnes JE, Lund-Andersen PK, Patel JSuresh, F Ytreberg M.  2022.  The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6.. Sci Rep. 12(1):18819.

Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A.  2022.  Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.

Beach SS, Hull MKA, F Ytreberg M, Patel JSuresh, Miura TA.  2022.  Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein.. J Virol. 96(13):e0035322.

Dolgikh B, Woldring D.  2022.  Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations.. Methods Mol Biol. 2491:63-73.

Hasnain MJawad Ul, Amin F, Ghani A, Ahmad S, Rahman Z, Aslam T, Pervez MTariq.  2022.  Structural and Functional Impact of Damaging Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs) on Human VPS35 Protein Using Computational Approaches.. IEEE/ACM Trans Comput Biol Bioinform. 19(6):3715-3724.

Petrosino M, Novak L, Pasquo A, Chiaraluce R, Turina P, Capriotti E, Consalvi V.  2021.  Analysis and Interpretation of the Impact of Missense Variants in Cancer.. Int J Mol Sci. 22(11)

Wu X, Craik DJ, Kaas Q.  2021.  Interactions of Globular and Ribbon [γ4E]GID with α4β2 Neuronal Nicotinic Acetylcholine Receptor.. Mar Drugs. 19(9)

Ying Y, Hong X, Xu X, Zhang J, He J, Zhu F, Xie X.  2021.  Mechanism evaluation for an amino acid substitution p.Y246C of B-glycosyltransferase enzyme with Bweak phenotype.. Vox Sang. 116(4):464-470.

Yang P-K, Liang X-Y, Lin M, Chen J-T, Huang H-Y, Lin L-Y, Ehapo CSalas, Eyi UMonsuy, Zheng Y-Z, De Xie D- et al..  2021.  Population genetic analysis of the Plasmodium falciparum erythrocyte binding antigen-175 (EBA-175) gene in Equatorial Guinea.. Malar J. 20(1):374.

Bahia MSingh, Khazanov N, Zhou Q, Yang Z, Wang C, Hong JS, Rab A, Sorscher EJ, Brouillette CG, Hunt JF et al..  2021.  Stability Prediction for Mutations in the Cytosolic Domains of Cystic Fibrosis Transmembrane Conductance Regulator.. J Chem Inf Model. 61(4):1762-1777.

Rasafar N, Barzegar A, Aghdam EMehdizadeh.  2020.  Design and development of high affinity dual anticancer peptide-inhibitors against p53-MDM2/X interaction.. Life Sci. 245:117358.

Othman H, Bouslama Z, Brandenburg J-T, da Rocha J, Hamdi, sr Y, Ghedira K, Srairi-Abid N, Hazelhurst S.  2020.  Interaction of the spike protein RBD from SARS-CoV-2 with ACE2: Similarity with SARS-CoV, hot-spot analysis and effect of the receptor polymorphism.. Biochem Biophys Res Commun. 527(3):702-708.

Chitongo R, Obasa AEmmanuel, Mikasi SGiven, Jacobs GBrendon, Cloete R.  2020.  Molecular dynamic simulations to investigate the structural impact of known drug resistance mutations on HIV-1C Integrase-Dolutegravir binding.. PLoS One. 15(5):e0223464.

Reyes-Espinosa F, Juárez-Saldivar A, Palos I, Herrera-Mayorga V, García-Pérez C, Rivera G.  2019.  In Silico Analysis of Homologous Heterodimers of Cruzipain-Chagasin from Structural Models Built by Homology.. Int J Mol Sci. 20(6)

Khan NSaba, Verma R, Pradhan D, Nayek A, Bhuyan R, Sahu TKumar, Jain AKumar.  2018.  Analysis of interleukin 23 and 7G10 interactions for computational design of lead antibodies against immune-mediated inflammatory diseases.. J Recept Signal Transduct Res. 38(4):327-334.

Azadi S, Tafazzoli-Shadpour M, Omidvar R.  2018.  [Steered Molecular Dynamics Simulation Study of Quantified Effects of Point Mutation Induced by Breast Cancer on Mechanical Behavior of E-Cadherin].. Mol Biol (Mosk). 52(5):836-845.

Gapsys V, de Groot BL.  2017.  Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.

Li L, Ye Y, Sang P, Yin Y, Hu W, Wang J, Zhang C, Li D, Wan W, Li R et al..  2017.  Effect of R119G Mutation on Human P5CR1 Dynamic Property and Enzymatic Activity.. Biomed Res Int. 2017:4184106.

Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MReza, Löfblom J, Virtanen A, U Danielson H et al..  2017.  Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.

Sirin S, Apgar JR, Bennett EM, Keating AE.  2016.  AB-Bind: Antibody binding mutational database for computational affinity predictions.. Protein Sci. 25(2):393-409.

Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL.  2016.  Biological function derived from predicted structures in CASP11.. Proteins. 84 Suppl 1:370-91.