Biblio

Found 19 results
Filters: Keyword is Binding Sites  [Clear All Filters]
2022
Liu Y-Y, Lin I-C, Chen P-C, Lee C-C, Meng M.  2022.  Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides.. Int J Biol Macromol. 222(Pt B):2258-2269.
Li S, Patel JSuresh, Yang J, Crabtree AMarie, Rubenstein BMarilyn, Lund-Andersen PKarl, Ytreberg FMarty, Rowley PAndrew.  2022.  Defining the HIV Capsid Binding Site of Nucleoporin 153.. mSphere. 7(5):e0031022.
2021
Vera AManuel, Galera-Prat A, Wojciechowski M, Różycki B, Laurents DV, Carrión-Vázquez M, Cieplak M, Tinnefeld P.  2021.  Cohesin-dockerin code in cellulosomal dual binding modes and its allosteric regulation by proline isomerization.. Structure. 29(6):587-597.e8.
Wu X, Craik DJ, Kaas Q.  2021.  Interactions of Globular and Ribbon [γ4E]GID with α4β2 Neuronal Nicotinic Acetylcholine Receptor.. Mar Drugs. 19(9)
Bahia MSingh, Khazanov N, Zhou Q, Yang Z, Wang C, Hong JS, Rab A, Sorscher EJ, Brouillette CG, Hunt JF et al..  2021.  Stability Prediction for Mutations in the Cytosolic Domains of Cystic Fibrosis Transmembrane Conductance Regulator.. J Chem Inf Model. 61(4):1762-1777.
2020
Othman H, Bouslama Z, Brandenburg J-T, da Rocha J, Hamdi, sr Y, Ghedira K, Srairi-Abid N, Hazelhurst S.  2020.  Interaction of the spike protein RBD from SARS-CoV-2 with ACE2: Similarity with SARS-CoV, hot-spot analysis and effect of the receptor polymorphism.. Biochem Biophys Res Commun. 527(3):702-708.
2019
Reyes-Espinosa F, Juárez-Saldivar A, Palos I, Herrera-Mayorga V, García-Pérez C, Rivera G.  2019.  In Silico Analysis of Homologous Heterodimers of Cruzipain-Chagasin from Structural Models Built by Homology.. Int J Mol Sci. 20(6)
2018
Carleton LA, Chakravarthy R, van der Sloot AM, Mnich K, Serrano L, Samali A, Gorman AM.  2018.  Generation of rationally-designed nerve growth factor (NGF) variants with receptor specificity.. Biochem Biophys Res Commun. 495(1):700-705.
2017
Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MReza, Löfblom J, Virtanen A, U Danielson H et al..  2017.  Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.
2016
Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL.  2016.  Biological function derived from predicted structures in CASP11.. Proteins. 84 Suppl 1:370-91.
Luo X-J, Zhao J, Li C-X, Bai Y-P, Reetz MT, Yu H-L, Xu J-H.  2016.  Combinatorial evolution of phosphotriesterase toward a robust malathion degrader by hierarchical iteration mutagenesis.. Biotechnol Bioeng. 113(11):2350-7.
Kowalsky CA, Whitehead TA.  2016.  Determination of binding affinity upon mutation for type I dockerin-cohesin complexes from Clostridium thermocellum and Clostridium cellulolyticum using deep sequencing.. Proteins. 84(12):1914-1928.
2015
Liu Q, Ren J, Song J, Li J.  2015.  Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
Hashmi I, Shehu A.  2015.  idDock+: Integrating Machine Learning in Probabilistic Search for Protein-Protein Docking.. J Comput Biol. 22(9):806-22.
Yu H, Wang M-jun, Xuan N-xia, Shang Z-cai, Wu J.  2015.  Molecular dynamics simulation of the interactions between EHD1 EH domain and multiple peptides.. J Zhejiang Univ Sci B. 16(10):883-96.
2007
Kiel C, Serrano L.  2007.  Prediction of Ras-effector interactions using position energy matrices.. Bioinformatics. 23(17):2226-30.
2006
Musi V, Birdsall B, Fernandez-Ballester G, Guerrini R, Salvatori S, Serrano L, Pastore A.  2006.  New approaches to high-throughput structure characterization of SH3 complexes: the example of Myosin-3 and Myosin-5 SH3 domains from S. cerevisiae.. Protein Sci. 15(4):795-807.
Kiel C, Serrano L.  2006.  The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes.. J Mol Biol. 355(4):821-44.
2004
Kiel C, Serrano L, Herrmann C.  2004.  A detailed thermodynamic analysis of ras/effector complex interfaces.. J Mol Biol. 340(5):1039-58.