Biblio
Found 32 results
Filters: Keyword is Mutation [Clear All Filters]
Best templates outperform homology models in predicting the impact of mutations on protein stability.. Bioinformatics. 38(18):4312-4320.
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2022. Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations.. J Phys Chem B. 126(5):1004-1015.
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2022. The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6.. Sci Rep. 12(1):18819.
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2022. Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.
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2022. Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein.. J Virol. 96(13):e0035322.
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2022. MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.. Brief Bioinform. 23(3)
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2022. Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations.. Methods Mol Biol. 2491:63-73.
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2022. Structural and Functional Impact of Damaging Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs) on Human VPS35 Protein Using Computational Approaches.. IEEE/ACM Trans Comput Biol Bioinform. 19(6):3715-3724.
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2022. Engineering of Biological Pathways: Complex Formation and Signal Transduction.. Methods Mol Biol. 2315:59-70.
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2021. Interactions of Globular and Ribbon [γ4E]GID with α4β2 Neuronal Nicotinic Acetylcholine Receptor.. Mar Drugs. 19(9)
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2021. Stability Prediction for Mutations in the Cytosolic Domains of Cystic Fibrosis Transmembrane Conductance Regulator.. J Chem Inf Model. 61(4):1762-1777.
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2021. Assessment of software methods for estimating protein-protein relative binding affinities.. PLoS One. 15(12):e0240573.
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2020. Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.
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2017. BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
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2017. Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
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2017. AB-Bind: Antibody binding mutational database for computational affinity predictions.. Protein Sci. 25(2):393-409.
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2016. Optimized method for TAG protein homology modeling: In silico and experimental structural characterization.. Int J Biol Macromol. 88:102-12.
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2016. Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.
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2016. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
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2015. Linking genotypes database with locus-specific database and genotype-phenotype correlation in phenylketonuria.. Eur J Hum Genet. 23(3):302-9.
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2015. Assessing the correlation between mutant rhodopsin stability and the severity of retinitis pigmentosa.. Mol Vis. 20:183-99.
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2014. Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots.. BMC Bioinformatics. 15:57.
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2014. How protein stability and new functions trade off.. PLoS Comput Biol. 4(2):e1000002.
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