Biblio

Found 20 results
Filters: Keyword is Amino Acid Sequence  [Clear All Filters]
2022
Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A.  2022.  Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.
Martín M, Brunello FG, Modenutti CP, Nicola JP, Marti MA.  2022.  MotSASi: Functional short linear motifs (SLiMs) prediction based on genomic single nucleotide variants and structural data.. Biochimie. 197:59-73.
2020
Othman H, Bouslama Z, Brandenburg J-T, da Rocha J, Hamdi, sr Y, Ghedira K, Srairi-Abid N, Hazelhurst S.  2020.  Interaction of the spike protein RBD from SARS-CoV-2 with ACE2: Similarity with SARS-CoV, hot-spot analysis and effect of the receptor polymorphism.. Biochem Biophys Res Commun. 527(3):702-708.
Chitongo R, Obasa AEmmanuel, Mikasi SGiven, Jacobs GBrendon, Cloete R.  2020.  Molecular dynamic simulations to investigate the structural impact of known drug resistance mutations on HIV-1C Integrase-Dolutegravir binding.. PLoS One. 15(5):e0223464.
2019
Reyes-Espinosa F, Juárez-Saldivar A, Palos I, Herrera-Mayorga V, García-Pérez C, Rivera G.  2019.  In Silico Analysis of Homologous Heterodimers of Cruzipain-Chagasin from Structural Models Built by Homology.. Int J Mol Sci. 20(6)
Singh S, Choudhary S, Anand V, Jaswal S, Verma AK, Kumar S, Kaushik JK, Mohanty AK.  2019.  New insights into the catalytic inactivity of mammary gland protein-40, a chitinase-like protein expressed during mammary gland involution.. Mol Biol Rep. 46(2):2243-2257.
2017
Tomar JSingh, Peddinti RKrishna.  2017.  A. baumannii histone acetyl transferase Hpa2: optimization of homology modeling, analysis of protein-protein interaction and virtual screening.. J Biomol Struct Dyn. 35(5):1115-1126.
Xiong P, Zhang C, Zheng W, Zhang Y.  2017.  BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
Jones BJ, Lim HYee, Huang J, Kazlauskas RJ.  2017.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
2016
Tomar JSingh, Peddinti RKrishna.  2016.  Optimized method for TAG protein homology modeling: In silico and experimental structural characterization.. Int J Biol Macromol. 88:102-12.
2012
Kimberley FC, van der Sloot AM, Guadagnoli M, Cameron K, Schneider P, Marquart AJ, Versloot M, Serrano L, Medema J P.  2012.  The design and characterization of receptor-selective APRIL variants.. J Biol Chem. 287(44):37434-46.
Simões-Correia J, Figueiredo J, Lopes R, Stricher F, Oliveira C, Serrano L, Seruca R.  2012.  E-cadherin destabilization accounts for the pathogenicity of missense mutations in hereditary diffuse gastric cancer.. PLoS One. 7(3):e33783.
2008
Tokuriki N, Stricher F, Serrano L, Tawfik DS.  2008.  How protein stability and new functions trade off.. PLoS Comput Biol. 4(2):e1000002.
Baeten L, Reumers J, Tur V, Stricher F, Lenaerts T, Serrano L, Rousseau F, Schymkowitz J.  2008.  Reconstruction of protein backbones from the BriX collection of canonical protein fragments.. PLoS Comput Biol. 4(5):e1000083.
2007
Kiel C, Serrano L.  2007.  Prediction of Ras-effector interactions using position energy matrices.. Bioinformatics. 23(17):2226-30.
Szczepek M, Brondani V, Büchel J, Serrano L, Segal DJ, Cathomen T.  2007.  Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases.. Nat Biotechnol. 25(7):786-93.
2006
Arnould S, Chames P, Perez C, Lacroix E, Duclert A, Epinat J-C, Stricher F, Petit A-S, Patin A, Guillier S et al..  2006.  Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets.. J Mol Biol. 355(3):443-58.
Kiel C, Serrano L.  2006.  The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes.. J Mol Biol. 355(4):821-44.
2005
Kiel C, Wohlgemuth S, Rousseau F, Schymkowitz J, Ferkinghoff-Borg J, Wittinghofer F, Serrano L.  2005.  Recognizing and defining true Ras binding domains II: in silico prediction based on homology modelling and energy calculations.. J Mol Biol. 348(3):759-75.
1994
Abagyan R, Totrov M.  1994.  Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins.. J Mol Biol. 235(3):983-1002.