Found 108 results
Gapsys V, de Groot BL.  2017.  Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.
Tomar JSingh, Peddinti RKrishna.  2017.  A. baumannii histone acetyl transferase Hpa2: optimization of homology modeling, analysis of protein-protein interaction and virtual screening.. J Biomol Struct Dyn. 35(5):1115-1126.
Xiong P, Zhang C, Zheng W, Zhang Y.  2017.  BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
Jones BJ, Lim HYee, Huang J, Kazlauskas RJ.  2017.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
Kumar V, Rahman S, Choudhry H, Zamzami MA, Jamal MSarwar, Islam A, Ahmad F, Hassan MImtaiyaz.  2017.  Computing disease-linked SOD1 mutations: deciphering protein stability and patient-phenotype relations.. Sci Rep. 7(1):4678.
Li L, Ye Y, Sang P, Yin Y, Hu W, Wang J, Zhang C, Li D, Wan W, Li R et al..  2017.  Effect of R119G Mutation on Human P5CR1 Dynamic Property and Enzymatic Activity.. Biomed Res Int. 2017:4184106.
Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MReza, Löfblom J, Virtanen A, U Danielson H et al..  2017.  Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.
Carlin DAlexander, Hapig-Ward S, Chan BWayne, Damrau N, Riley M, Caster RW, Bethards B, Siegel JB.  2017.  Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designed.. PLoS One. 12(5):e0176255.
Sirin S, Apgar JR, Bennett EM, Keating AE.  2016.  AB-Bind: Antibody binding mutational database for computational affinity predictions.. Protein Sci. 25(2):393-409.
Sulea T, Vivcharuk V, Corbeil CR, Deprez C, Purisima EO.  2016.  Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities.. J Chem Inf Model. 56(7):1292-303.
Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL.  2016.  Biological function derived from predicted structures in CASP11.. Proteins. 84 Suppl 1:370-91.
Luo X-J, Zhao J, Li C-X, Bai Y-P, Reetz MT, Yu H-L, Xu J-H.  2016.  Combinatorial evolution of phosphotriesterase toward a robust malathion degrader by hierarchical iteration mutagenesis.. Biotechnol Bioeng. 113(11):2350-7.
Kowalsky CA, Whitehead TA.  2016.  Determination of binding affinity upon mutation for type I dockerin-cohesin complexes from Clostridium thermocellum and Clostridium cellulolyticum using deep sequencing.. Proteins. 84(12):1914-1928.
Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, F Ytreberg M.  2016.  Initiating a watch list for Ebola virus antibody escape mutations.. PeerJ. 4:e1674.
Nygaard M, Terkelsen T, Olsen AVidas, Sora V, Viloria JSalamanca, Rizza F, Bergstrand-Poulsen S, Di Marco M, Vistesen M, Tiberti M et al..  2016.  The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.. Front Mol Biosci. 3:78.
Tomar JSingh, Peddinti RKrishna.  2016.  Optimized method for TAG protein homology modeling: In silico and experimental structural characterization.. Int J Biol Macromol. 88:102-12.
Van Durme J, De Baets G, Van Der Kant R, Ramakers M, Ganesan A, Wilkinson H, Gallardo R, Rousseau F, Schymkowitz J.  2016.  Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.