Biblio

Found 108 results
2018
Radusky L, Modenutti C, Delgado J, Bustamante JP, Vishnopolska S, Kiel C, Serrano L, Marti M, Turjanski A.  2018.  VarQ: A Tool for the Structural and Functional Analysis of Human Protein Variants.. Front Genet. 9:620.
2017
Gapsys V, de Groot BL.  2017.  Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.
Tomar JSingh, Peddinti RKrishna.  2017.  A. baumannii histone acetyl transferase Hpa2: optimization of homology modeling, analysis of protein-protein interaction and virtual screening.. J Biomol Struct Dyn. 35(5):1115-1126.
Xiong P, Zhang C, Zheng W, Zhang Y.  2017.  BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
Jones BJ, Lim HYee, Huang J, Kazlauskas RJ.  2017.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
Kumar V, Rahman S, Choudhry H, Zamzami MA, Jamal MSarwar, Islam A, Ahmad F, Hassan MImtaiyaz.  2017.  Computing disease-linked SOD1 mutations: deciphering protein stability and patient-phenotype relations.. Sci Rep. 7(1):4678.
Li L, Ye Y, Sang P, Yin Y, Hu W, Wang J, Zhang C, Li D, Wan W, Li R et al..  2017.  Effect of R119G Mutation on Human P5CR1 Dynamic Property and Enzymatic Activity.. Biomed Res Int. 2017:4184106.
Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MReza, Löfblom J, Virtanen A, U Danielson H et al..  2017.  Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.
Carlin DAlexander, Hapig-Ward S, Chan BWayne, Damrau N, Riley M, Caster RW, Bethards B, Siegel JB.  2017.  Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designed.. PLoS One. 12(5):e0176255.
2016
Sirin S, Apgar JR, Bennett EM, Keating AE.  2016.  AB-Bind: Antibody binding mutational database for computational affinity predictions.. Protein Sci. 25(2):393-409.
Sulea T, Vivcharuk V, Corbeil CR, Deprez C, Purisima EO.  2016.  Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities.. J Chem Inf Model. 56(7):1292-303.
Huwe PJ, Xu Q, Shapovalov MV, Modi V, Andrake MD, Dunbrack RL.  2016.  Biological function derived from predicted structures in CASP11.. Proteins. 84 Suppl 1:370-91.
Luo X-J, Zhao J, Li C-X, Bai Y-P, Reetz MT, Yu H-L, Xu J-H.  2016.  Combinatorial evolution of phosphotriesterase toward a robust malathion degrader by hierarchical iteration mutagenesis.. Biotechnol Bioeng. 113(11):2350-7.
Kowalsky CA, Whitehead TA.  2016.  Determination of binding affinity upon mutation for type I dockerin-cohesin complexes from Clostridium thermocellum and Clostridium cellulolyticum using deep sequencing.. Proteins. 84(12):1914-1928.
Miller CR, Johnson EL, Burke AZ, Martin KP, Miura TA, Wichman HA, Brown CJ, F Ytreberg M.  2016.  Initiating a watch list for Ebola virus antibody escape mutations.. PeerJ. 4:e1674.
Nygaard M, Terkelsen T, Olsen AVidas, Sora V, Viloria JSalamanca, Rizza F, Bergstrand-Poulsen S, Di Marco M, Vistesen M, Tiberti M et al..  2016.  The Mutational Landscape of the Oncogenic MZF1 SCAN Domain in Cancer.. Front Mol Biosci. 3:78.
Tomar JSingh, Peddinti RKrishna.  2016.  Optimized method for TAG protein homology modeling: In silico and experimental structural characterization.. Int J Biol Macromol. 88:102-12.
Van Durme J, De Baets G, Van Der Kant R, Ramakers M, Ganesan A, Wilkinson H, Gallardo R, Rousseau F, Schymkowitz J.  2016.  Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.
2015
Liu Q, Ren J, Song J, Li J.  2015.  Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
Hashmi I, Shehu A.  2015.  idDock+: Integrating Machine Learning in Probabilistic Search for Protein-Protein Docking.. J Comput Biol. 22(9):806-22.
Heselpoth RD, Yin Y, Moult J, Nelson DC.  2015.  Increasing the stability of the bacteriophage endolysin PlyC using rationale-based FoldX computational modeling.. Protein Eng Des Sel. 28(4):85-92.
Wettstein S, Underhaug J, Perez B, Marsden BD, Yue WW, Martinez A, Blau N.  2015.  Linking genotypes database with locus-specific database and genotype-phenotype correlation in phenylketonuria.. Eur J Hum Genet. 23(3):302-9.
Yu H, Wang M-jun, Xuan N-xia, Shang Z-cai, Wu J.  2015.  Molecular dynamics simulation of the interactions between EHD1 EH domain and multiple peptides.. J Zhejiang Univ Sci B. 16(10):883-96.
Singh I, Nunia V, Sharma R, Barupal J, Govindaraj P, Jain R, Gupta GN, Goyal PK.  2015.  Mutational analysis of telomere complex genes in Indian population with acquired aplastic anemia.. Leuk Res.
erný JČ, Biedermannová L, Mikulecký P, Zahradník J, Charnavets T, ebo PŠ, Schneider B.  2015.  Redesigning protein cavities as a strategy for increasing affinity in protein-protein interaction: interferon- γ receptor 1 as a model.. Biomed Res Int. 2015:716945.