Biblio

Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, Lastrucci C, Piñero-Lambea C, Lluch-Senar M, Serrano L.  2023.  Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.. Mol Syst Biol. 19(1):e11037.

Hajihassan Z, Afsharian NPesaran, Ansari-Pour N.  2023.  In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy.. J Immunol Methods. 513:113425.

Koşaca M, Yılmazbilek İ, Karaca E.  2023.  PROT-ON: A structure-based detection of designer PROTein interface MutatiONs.. Front Mol Biosci. 10:1063971.

Le J, Min J-H.  2023.  Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein.. J Biomol Struct Dyn. :1-28.

M DDarshan V, Sivaramakrishnan V, K Kumar A.  2023.  Structural systems biology approach delineate the functional implications of SNPs in exon junction complex interaction network.. J Biomol Struct Dyn. :1-18.

Pak MA, Ivankov DN.  2022.  Best templates outperform homology models in predicting the impact of mutations on protein stability.. Bioinformatics. 38(18):4312-4320.

Liu Y-Y, Lin I-C, Chen P-C, Lee C-C, Meng M.  2022.  Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides.. Int J Biol Macromol. 222(Pt B):2258-2269.

Li S, Patel JSuresh, Yang J, Crabtree AMarie, Rubenstein BMarilyn, Lund-Andersen PKarl, Ytreberg FMarty, Rowley PAndrew.  2022.  Defining the HIV Capsid Binding Site of Nucleoporin 153.. mSphere. 7(5):e0031022.

Yasuda S, Akiyama T, Kojima K, Ueta T, Hayashi T, Ogasawara S, Nagatoishi S, Tsumoto K, Kunishima N, Sudo Y et al..  2022.  Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations.. J Phys Chem B. 126(5):1004-1015.

Wang Y, Li C, Ban X, Gu Z, Hong Y, Cheng L, Li Z.  2022.  Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from STB07.. Foods. 11(9)

Barnes JE, Lund-Andersen PK, Patel JSuresh, F Ytreberg M.  2022.  The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6.. Sci Rep. 12(1):18819.

Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A.  2022.  Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.

Standley M, Blay V, Guthrie VBeleva, Kim J, Lyman A, Moya A, Karchin R, Camps M.  2022.  Experimental and Analysis of TEM β-Lactamase Adaptive Evolution.. ACS Infect Dis. 8(12):2451-2463.

Zhang B, Lü C, Zhang M, Xu F.  2022.  [Improving the thermal stability of lipase based on multiple computational design strategies].. Sheng Wu Gong Cheng Xue Bao. 38(4):1537-1553.

Beach SS, Hull MKA, F Ytreberg M, Patel JSuresh, Miura TA.  2022.  Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein.. J Virol. 96(13):e0035322.

Martín M, Brunello FG, Modenutti CP, Nicola JP, Marti MA.  2022.  MotSASi: Functional short linear motifs (SLiMs) prediction based on genomic single nucleotide variants and structural data.. Biochimie. 197:59-73.

Tiberti M, Terkelsen T, Degn K, Beltrame L, Cremers TCanter, da Piedade I, Di Marco M, Maiani E, Papaleo E.  2022.  MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.. Brief Bioinform. 23(3)

García-Cebollada H, López A, Sancho J.  2022.  Protposer: The web server that readily proposes protein stabilizing mutations with high PPV.. Comput Struct Biotechnol J. 20:2415-2433.

Radusky LG, Serrano L.  2022.  pyFoldX: enabling biomolecular analysis and engineering along structural ensembles.. Bioinformatics. 38(8):2353-2355.

Cui H, Davari MD, Schwaneberg U.  2022.  Recombination of Single Beneficial Substitutions Obtained from Protein Engineering by Computer-Assisted Recombination (CompassR).. Methods Mol Biol. 2461:9-18.

Dolgikh B, Woldring D.  2022.  Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations.. Methods Mol Biol. 2491:63-73.

Hasnain MJawad Ul, Amin F, Ghani A, Ahmad S, Rahman Z, Aslam T, Pervez MTariq.  2022.  Structural and Functional Impact of Damaging Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs) on Human VPS35 Protein Using Computational Approaches.. IEEE/ACM Trans Comput Biol Bioinform. 19(6):3715-3724.

Van Der Kant R, Louros N, Schymkowitz J, Rousseau F.  2022.  Thermodynamic analysis of amyloid fibril structures reveals a common framework for stability in amyloid polymorphs.. Structure. 30(8):1178-1189.e3.

Petrosino M, Novak L, Pasquo A, Chiaraluce R, Turina P, Capriotti E, Consalvi V.  2021.  Analysis and Interpretation of the Impact of Missense Variants in Cancer.. Int J Mol Sci. 22(11)

Vera AManuel, Galera-Prat A, Wojciechowski M, Różycki B, Laurents DV, Carrión-Vázquez M, Cieplak M, Tinnefeld P.  2021.  Cohesin-dockerin code in cellulosomal dual binding modes and its allosteric regulation by proline isomerization.. Structure. 29(6):587-597.e8.