command = LoopReconstruction pdb= LR.pdb LR_chain = A LR_pepStartRes = 338 LR_pepEndRes = 343 LR_screenOuput = 1 LR_sequence = CAAAAY LR_dsspBegin = H LR_dsspEnd = H LR_nbrClassesToEvaluate = 1 BriX_database = BriX BriX_PDBDir = yourDir/BriX/pdbs/ BriX_hostname = localhost BriX_user = yourUser BriX_pass = yourPass BriX_port = 3306 LoopX_database = LoopBriX LoopX_PDBDir = yourDir/LoopBriX/pdbs/