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Biblio

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FOLDX PAPERS

M DDarshan V, Sivaramakrishnan V, K Kumar A. "Structural systems biology approach delineate the functional implications of SNPs in exon junction complex interaction network." J Biomol Struct Dyn. 2023:1-18.
Koşaca M, Yılmazbilek İ, Karaca E. "PROT-ON: A structure-based detection of designer PROTein interface MutatiONs." Front Mol Biosci. 2023;10:1063971.
Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, et al. "Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation." Mol Syst Biol. 2023;19(1):e11037.
Le J, Min J-H. "Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein." J Biomol Struct Dyn. 2023:1-28.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N. "In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy." J Immunol Methods. 2023;513:113425.
Radusky LG, Serrano L. "pyFoldX: enabling biomolecular analysis and engineering along structural ensembles." Bioinformatics. 2022;38(8):2353-2355.
Beach SS, Hull MKA, F Ytreberg M, Patel JSuresh, Miura TA. "Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein." J Virol. 2022;96(13):e0035322.
Wang Y, Li C, Ban X, et al. "Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from STB07." Foods. 2022;11(9).
Liu Y-Y, Lin I-C, Chen P-C, Lee C-C, Meng M. "Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides." Int J Biol Macromol. 2022;222(Pt B):2258-2269.
Barnes JE, Lund-Andersen PK, Patel JSuresh, F Ytreberg M. "The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6." Sci Rep. 2022;12(1):18819.
Li S, Patel JSuresh, Yang J, et al. "Defining the HIV Capsid Binding Site of Nucleoporin 153." mSphere. 2022;7(5):e0031022.
Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A. "Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior." Proteins. 2022;90(1):258-269.
Pak MA, Ivankov DN. "Best templates outperform homology models in predicting the impact of mutations on protein stability." Bioinformatics. 2022;38(18):4312-4320.
Tiberti M, Terkelsen T, Degn K, et al. "MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles." Brief Bioinform. 2022;23(3).
Dolgikh B, Woldring D. "Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations." Methods Mol Biol. 2022;2491:63-73.
Martín M, Brunello FG, Modenutti CP, Nicola JP, Marti MA. "MotSASi: Functional short linear motifs (SLiMs) prediction based on genomic single nucleotide variants and structural data." Biochimie. 2022;197:59-73.
Yasuda S, Akiyama T, Kojima K, et al. "Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations." J Phys Chem B. 2022;126(5):1004-1015.

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