Biblio
Found 24 results
Filters: Keyword is Proteins [Clear All Filters]
Best templates outperform homology models in predicting the impact of mutations on protein stability.. Bioinformatics. 38(18):4312-4320.
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2022. MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.. Brief Bioinform. 23(3)
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2022. pyFoldX: enabling biomolecular analysis and engineering along structural ensembles.. Bioinformatics. 38(8):2353-2355.
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2022. Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations.. Methods Mol Biol. 2491:63-73.
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2022. Analysis and Interpretation of the Impact of Missense Variants in Cancer.. Int J Mol Sci. 22(11)
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2021. PDBe-KB: a community-driven resource for structural and functional annotations.. Nucleic Acids Res. 48(D1):D344-D353.
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2020. Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.
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2017. BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
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2017. Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
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2017. Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.
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2016. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
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2015. idDock+: Integrating Machine Learning in Probabilistic Search for Protein-Protein Docking.. J Comput Biol. 22(9):806-22.
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2015. Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots.. BMC Bioinformatics. 15:57.
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2014. SNPeffect 4.0: on-line prediction of molecular and structural effects of protein-coding variants.. Nucleic Acids Res. 40(Database issue):D935-9.
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2012. BriX: a database of protein building blocks for structural analysis, modeling and design.. Nucleic Acids Res. 39(Database issue):D435-42.
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2011. A graphical interface for the FoldX forcefield.. Bioinformatics. 27(12):1711-2.
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2011. Protein design with fragment databases.. Curr Opin Struct Biol. 21(4):452-9.
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2011. Reconstruction of protein backbones from the BriX collection of canonical protein fragments.. PLoS Comput Biol. 4(5):e1000083.
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2008. The stability effects of protein mutations appear to be universally distributed.. J Mol Biol. 369(5):1318-32.
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The FoldX web server: an online force field.. Nucleic Acids Res. 33(Web Server issue):W382-8.
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2005. Predicting changes in the stability of proteins and protein complexes: a study of more than 1000 mutations.. J Mol Biol. 320(2):369-87.
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2002. Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins.. J Mol Biol. 235(3):983-1002.
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