Biblio
Found 29 results
Filters: Keyword is Models, Molecular [Clear All Filters]
A. baumannii histone acetyl transferase Hpa2: optimization of homology modeling, analysis of protein-protein interaction and virtual screening.. J Biomol Struct Dyn. 35(5):1115-1126.
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2017. BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
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2017. Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
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2017. Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.
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2017. Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities.. J Chem Inf Model. 56(7):1292-303.
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2016. Solubis: a webserver to reduce protein aggregation through mutation.. Protein Eng Des Sel. 29(8):285-9.
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2016. Co-Occurring Atomic Contacts for the Characterization of Protein Binding Hot Spots.. PLoS One. 10(12):e0144486.
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2015. Improving the anti-toxin abilities of the CMG2-Fc fusion protein with the aid of computational design.. PLoS One. 9(8):e104674.
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2014. Integrating water exclusion theory into β contacts to predict binding free energy changes and binding hot spots.. BMC Bioinformatics. 15:57.
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2014. The design and characterization of receptor-selective APRIL variants.. J Biol Chem. 287(44):37434-46.
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2012. BriX: a database of protein building blocks for structural analysis, modeling and design.. Nucleic Acids Res. 39(Database issue):D435-42.
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2011. Protein design with fragment databases.. Curr Opin Struct Biol. 21(4):452-9.
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2011. How protein stability and new functions trade off.. PLoS Comput Biol. 4(2):e1000002.
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2008. Reconstruction of protein backbones from the BriX collection of canonical protein fragments.. PLoS Comput Biol. 4(5):e1000083.
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2008. Prediction of Ras-effector interactions using position energy matrices.. Bioinformatics. 23(17):2226-30.
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2007. Computer modelling in combination with in vitro studies reveals similar binding affinities of Drosophila Crumbs for the PDZ domains of Stardust and DmPar-6.. Eur J Cell Biol. 85(8):753-67.
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2006. Designed tumor necrosis factor-related apoptosis-inducing ligand variants initiating apoptosis exclusively via the DR5 receptor.. Proc Natl Acad Sci U S A. 103(23):8634-9.
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2006. Engineering of large numbers of highly specific homing endonucleases that induce recombination on novel DNA targets.. J Mol Biol. 355(3):443-58.
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2006. New approaches to high-throughput structure characterization of SH3 complexes: the example of Myosin-3 and Myosin-5 SH3 domains from S. cerevisiae.. Protein Sci. 15(4):795-807.
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2006. The ubiquitin domain superfold: structure-based sequence alignments and characterization of binding epitopes.. J Mol Biol. 355(4):821-44.
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2006. Prediction of water and metal binding sites and their affinities by using the Fold-X force field.. Proc Natl Acad Sci U S A. 102(29):10147-52.
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2005. Recognizing and defining true Ras binding domains I: biochemical analysis.. J Mol Biol. 348(3):741-58.
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