Biblio

Found 173 results
2024
Ozden B, amiloğlu EŞ, zsan AÖ, Erguven M, Yükrük C, Koşaca M, Oktayoğlu M, Menteş M, Arslan N, Karakülah G et al..  2024.  Benchmarking the accuracy of structure-based binding affinity predictors on Spike-ACE2 deep mutational interaction set.. Proteins. 92(4):529-539.
G Sankari S, James R, Payva F, Sivaramakrishnan V, Kumar TVVineeth, Kanchi S, Santhy KS.  2024.  Computational analysis of sodium-dependent phosphate transporter SLC20A1/PiT1 gene identifies missense variations C573F, and T58A as high-risk deleterious SNPs.. J Biomol Struct Dyn. 42(8):4072-4086.
Fan S, Lü X, Wei X, Lü R, Feng C, Jin Y, Yan M, Yang Z.  2024.  Computational design of α-amylase from to increase its activity and stability at high temperatures.. Comput Struct Biotechnol J. 23:982-989.
Wu X, Hone AJ, Huang Y-H, Clark RJ, J McIntosh M, Kaas Q, Craik DJ.  2024.  Computational Design of α-Conotoxins to Target Specific Nicotinic Acetylcholine Receptor Subtypes.. Chemistry. 30(7):e202302909.
Xu S-Y, Chu R-L, Liu H-T, Weng C-Y, Wang Y-J, Zheng Y-G.  2024.  Computer-directed rational design enhanced the thermostability of carbonyl reductase LsCR for the synthesis of ticagrelor precursor.. Biotechnol Bioeng. 121(5):1532-1542.
Goettig P, Chen X, Harris JM.  2024.  Correlation of Experimental and Calculated Inhibition Constants of Protease Inhibitor Complexes.. Int J Mol Sci. 25(4)
Mamata M, Padma G, T Laxmi P, Saroja K, Ashwin D, Suman J.  2024.  Identification of a Novel Variant in Gene Resulting in a Beta Null Phenotype in a Proband with Thalassemia Intermedia.. Hemoglobin. 48(1):1-3.
Huang A, Chen Z, Wu X, Yan W, Lu F, Liu F.  2024.  Improving the thermal stability and catalytic activity of ulvan lyase by the combination of FoldX and KnowVolution campaign.. Int J Biol Macromol. 257(Pt 1):128577.
Darshan VMDatta, Arumugam N, Almansour AI, Sivaramakrishnan V, Kanchi S.  2024.  In silico energetic and molecular dynamic simulations studies demonstrate potential effect of the point mutations with implications for protein engineering in BDNF.. Int J Biol Macromol. :132247.
Parvar SJamshidi, Hall BA, Shorthouse D.  2024.  Interpreting the effect of mutations to protein binding sites from large-scale genomic screens.. Methods. 222:122-132.
Lyu Q, Lin Y, Pan Y, Guan X, Ji X, Peng M, Li Q, Wang Z, Zhang Z, Luo Z et al..  2024.  The polymorphism analysis for CD36 among platelet donors.. Sci Rep. 14(1):8534.
2023
Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, Lastrucci C, Piñero-Lambea C, Lluch-Senar M, Serrano L.  2023.  Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.. Mol Syst Biol. 19(1):e11037.
Malbranke C, Rostain W, Depardieu F, Cocco S, Monasson R, Bikard D.  2023.  Computational design of novel Cas9 PAM-interacting domains using evolution-based modelling and structural quality assessment.. PLoS Comput Biol. 19(11):e1011621.
Jia D-X, Yu H, Wang F, Jin L-Q, Liu Z-Q, Zheng Y-G.  2023.  Computer-aided design of novel cellobiose 2-epimerase for efficient synthesis of lactulose using lactose.. Bioprocess Biosyst Eng. 46(9):1279-1291.
Gerasimavicius L, Livesey BJ, Marsh JA.  2023.  Correspondence between functional scores from deep mutational scans and predicted effects on protein stability.. Protein Sci. 32(7):e4688.
Biswas G, Mukherjee D, Dutta N, Ghosh P, Basu S.  2023.  EnCPdock: a web-interface for direct conjoint comparative analyses of complementarity and binding energetics in inter-protein associations.. J Mol Model. 29(8):239.
Hajihassan Z, Saray MMohammadpo, Yaseri A.  2023.  Engineering a CEACAM1 Variant with the Increased Binding Affinity to TIM-3 Receptor.. Iran Biomed J. 27(4):191-8.
Ming Y, Zhang H, Zhao Z, Zhang Z, Wang H, Liang Z.  2023.  Enhancing the thermostability of carboxypeptidase A by a multiple computer-aided rational design based on amino acids preferences at β-turns.. Int J Biol Macromol. 245:125447.
Li Z, Zhao C, Li D, Wang L.  2023.  Enhancing the thermostability of Streptomyces cyaneofuscatus strain Ms1 tyrosinase by multi-factors rational design and molecular dynamics simulations.. PLoS One. 18(7):e0288929.
Liu Y, Sheng W, Hou S, Hou M, Zhang Y, Wang X, Zhang S, Zhou F, Cai C, Wang W.  2023.  Functional Characterization of a Novel SLC4A4 Variant and Uniparental Isodisomy in Proximal Renal Tubular Acidosis Patient.. Biochem Genet.
Cardama GA, Bucci PL, Lemos JS, Llavona C, Benavente MA, Hellmén E, Fara MLaura, Medrano E, Spitzer E, Demarco IA et al..  2023.  In Silico and In Vitro Evaluation of Bevacizumab Biosimilar MB02 as an Antitumor Agent in Canine Mammary Carcinoma.. Animals (Basel). 13(15)
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N.  2023.  In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy.. J Immunol Methods. 513:113425.
Petrovskiy DV, Nikolsky KS, Rudnev VR, Kulikova LI, Butkova TV, Malsagova KA, Kopylov AT, Kaysheva AL.  2023.  Modeling Side Chains in the Three-Dimensional Structure of Proteins for Post-Translational Modifications.. Int J Mol Sci. 24(17)
Xue Y, Zhao Y, Wu B, Shu J, Yan D, Li D, Yu X, Cai C.  2023.  A novel variant in ALG1 gene associated with congenital disorder of glycosylation: A case report and short literature review.. Mol Genet Genomic Med. 11(8):e2197.
Koşaca M, Yılmazbilek İ, Karaca E.  2023.  PROT-ON: A structure-based detection of designer PROTein interface MutatiONs.. Front Mol Biosci. 10:1063971.