Biblio

Yasuda S, Akiyama T, Kojima K, Ueta T, Hayashi T, Ogasawara S, Nagatoishi S, Tsumoto K, Kunishima N, Sudo Y et al..  2022.  Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations.. J Phys Chem B. 126(5):1004-1015.

Wang Y, Li C, Ban X, Gu Z, Hong Y, Cheng L, Li Z.  2022.  Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from STB07.. Foods. 11(9)

Barnes JE, Lund-Andersen PK, Patel JSuresh, F Ytreberg M.  2022.  The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6.. Sci Rep. 12(1):18819.

Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A.  2022.  Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.

Standley M, Blay V, Guthrie VBeleva, Kim J, Lyman A, Moya A, Karchin R, Camps M.  2022.  Experimental and Analysis of TEM β-Lactamase Adaptive Evolution.. ACS Infect Dis. 8(12):2451-2463.

Zhang B, Lü C, Zhang M, Xu F.  2022.  [Improving the thermal stability of lipase based on multiple computational design strategies].. Sheng Wu Gong Cheng Xue Bao. 38(4):1537-1553.

Beach SS, Hull MKA, F Ytreberg M, Patel JSuresh, Miura TA.  2022.  Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein.. J Virol. 96(13):e0035322.

Martín M, Brunello FG, Modenutti CP, Nicola JP, Marti MA.  2022.  MotSASi: Functional short linear motifs (SLiMs) prediction based on genomic single nucleotide variants and structural data.. Biochimie. 197:59-73.

Tiberti M, Terkelsen T, Degn K, Beltrame L, Cremers TCanter, da Piedade I, Di Marco M, Maiani E, Papaleo E.  2022.  MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.. Brief Bioinform. 23(3)

García-Cebollada H, López A, Sancho J.  2022.  Protposer: The web server that readily proposes protein stabilizing mutations with high PPV.. Comput Struct Biotechnol J. 20:2415-2433.

Radusky LG, Serrano L.  2022.  pyFoldX: enabling biomolecular analysis and engineering along structural ensembles.. Bioinformatics. 38(8):2353-2355.

Cui H, Davari MD, Schwaneberg U.  2022.  Recombination of Single Beneficial Substitutions Obtained from Protein Engineering by Computer-Assisted Recombination (CompassR).. Methods Mol Biol. 2461:9-18.

Dolgikh B, Woldring D.  2022.  Site-wise Diversification of Combinatorial Libraries Using Insights from Structure-guided Stability Calculations.. Methods Mol Biol. 2491:63-73.

Hasnain MJawad Ul, Amin F, Ghani A, Ahmad S, Rahman Z, Aslam T, Pervez MTariq.  2022.  Structural and Functional Impact of Damaging Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs) on Human VPS35 Protein Using Computational Approaches.. IEEE/ACM Trans Comput Biol Bioinform. 19(6):3715-3724.

Van Der Kant R, Louros N, Schymkowitz J, Rousseau F.  2022.  Thermodynamic analysis of amyloid fibril structures reveals a common framework for stability in amyloid polymorphs.. Structure. 30(8):1178-1189.e3.

Petrosino M, Novak L, Pasquo A, Chiaraluce R, Turina P, Capriotti E, Consalvi V.  2021.  Analysis and Interpretation of the Impact of Missense Variants in Cancer.. Int J Mol Sci. 22(11)

Vera AManuel, Galera-Prat A, Wojciechowski M, Różycki B, Laurents DV, Carrión-Vázquez M, Cieplak M, Tinnefeld P.  2021.  Cohesin-dockerin code in cellulosomal dual binding modes and its allosteric regulation by proline isomerization.. Structure. 29(6):587-597.e8.

Zhang C, Codina N, Tang J, Yu H, Chakroun N, Kozielski F, Dalby PA.  2021.  Comparison of the pH- and thermally-induced fluctuations of a therapeutic antibody Fab fragment by molecular dynamics simulation.. Comput Struct Biotechnol J. 19:2726-2741.

Bi J, Jing X, Wu L, Zhou X, Gu J, Nie Y, Xu Y.  2021.  Computational design of noncanonical amino acid-based thioether staples at N/C-terminal domains of multi-modular pullulanase for thermostabilization in enzyme catalysis.. Comput Struct Biotechnol J. 19:577-585.

Armaghan F, Hajihassan Z.  2021.  Engineering a variant of IL-17RA with high binding affinity to IL-17A for optimized immunotherapy.. Biotechnol Rep (Amst). 32:e00682.

Junk P, Kiel C.  2021.  Engineering of Biological Pathways: Complex Formation and Signal Transduction.. Methods Mol Biol. 2315:59-70.

Zhao Y, Li D, Bai X, Luo M, Feng Y, Zhao Y, Ma F, Yang G-Y.  2021.  Improved thermostability of proteinase K and recognizing the synergistic effect of Rosetta and FoldX approaches.. Protein Eng Des Sel. 34

Wu X, Craik DJ, Kaas Q.  2021.  Interactions of Globular and Ribbon [γ4E]GID with α4β2 Neuronal Nicotinic Acetylcholine Receptor.. Mar Drugs. 19(9)

Ying Y, Hong X, Xu X, Zhang J, He J, Zhu F, Xie X.  2021.  Mechanism evaluation for an amino acid substitution p.Y246C of B-glycosyltransferase enzyme with Bweak phenotype.. Vox Sang. 116(4):464-470.

Yang P-K, Liang X-Y, Lin M, Chen J-T, Huang H-Y, Lin L-Y, Ehapo CSalas, Eyi UMonsuy, Zheng Y-Z, De Xie D- et al..  2021.  Population genetic analysis of the Plasmodium falciparum erythrocyte binding antigen-175 (EBA-175) gene in Equatorial Guinea.. Malar J. 20(1):374.