Biblio

Found 153 results
2023
Montero-Blay A, Blanco JDelgado, Rodriguez-Arce I, Lastrucci C, Piñero-Lambea C, Lluch-Senar M, Serrano L.  2023.  Bacterial expression of a designed single-chain IL-10 prevents severe lung inflammation.. Mol Syst Biol. 19(1):e11037.
Jia D-X, Yu H, Wang F, Jin L-Q, Liu Z-Q, Zheng Y-G.  2023.  Computer-aided design of novel cellobiose 2-epimerase for efficient synthesis of lactulose using lactose.. Bioprocess Biosyst Eng. 46(9):1279-1291.
Hajihassan Z, Afsharian NPesaran, Ansari-Pour N.  2023.  In silico engineering a CD80 variant with increased affinity to CTLA-4 and decreased affinity to CD28 for optimized cancer immunotherapy.. J Immunol Methods. 513:113425.
Xue Y, Zhao Y, Wu B, Shu J, Yan D, Li D, Yu X, Cai C.  2023.  A novel variant in ALG1 gene associated with congenital disorder of glycosylation: A case report and short literature review.. Mol Genet Genomic Med. 11(8):e2197.
Koşaca M, Yılmazbilek İ, Karaca E.  2023.  PROT-ON: A structure-based detection of designer PROTein interface MutatiONs.. Front Mol Biosci. 10:1063971.
Hong X, Lv J, Li Z, Xiong Y, Zhang J, Chen H-F.  2023.  Sequence-based machine learning method for predicting the effects of phosphorylation on protein-protein interactions.. Int J Biol Macromol. 243:125233.
Liu N, Xiao H, Zang Y, Zhou L, Mencius J, Yang Z, Quan S, Chen X.  2023.  Simultaneous Improvement in the Thermostability and Catalytic Activity of Epoxidase Lsd18 for the Synthesis of Lasalocid A.. Int J Mol Sci. 24(23)
Sapozhnikov Y, Patel JSuresh, F Ytreberg M, Miller CR.  2023.  Statistical modeling to quantify the uncertainty of FoldX-predicted protein folding and binding stability.. BMC Bioinformatics. 24(1):426.
Le J, Min J-H.  2023.  Structural modeling and analyses of genetic variations in the human XPC nucleotide excision repair protein.. J Biomol Struct Dyn. :1-28.
M DDarshan V, Sivaramakrishnan V, K Kumar A.  2023.  Structural systems biology approach delineate the functional implications of SNPs in exon junction complex interaction network.. J Biomol Struct Dyn. :1-18.
Junk P, Kiel C.  2023.  Structure-based prediction of Ras-effector binding affinities and design of "branchegetic" interface mutations.. Structure. 31(7):870-883.e5.
2022
Pak MA, Ivankov DN.  2022.  Best templates outperform homology models in predicting the impact of mutations on protein stability.. Bioinformatics. 38(18):4312-4320.
Liu Y-Y, Lin I-C, Chen P-C, Lee C-C, Meng M.  2022.  Crystal structure of a Burkholderia peptidase and modification of the substrate-binding site for enhanced hydrolytic activity toward gluten-derived pro-immunogenic peptides.. Int J Biol Macromol. 222(Pt B):2258-2269.
Li S, Patel JSuresh, Yang J, Crabtree AMarie, Rubenstein BMarilyn, Lund-Andersen PKarl, Ytreberg FMarty, Rowley PAndrew.  2022.  Defining the HIV Capsid Binding Site of Nucleoporin 153.. mSphere. 7(5):e0031022.
Yasuda S, Akiyama T, Kojima K, Ueta T, Hayashi T, Ogasawara S, Nagatoishi S, Tsumoto K, Kunishima N, Sudo Y et al..  2022.  Development of an Outward Proton Pumping Rhodopsin with a New Record in Thermostability by Means of Amino Acid Mutations.. J Phys Chem B. 126(5):1004-1015.
Wang Y, Li C, Ban X, Gu Z, Hong Y, Cheng L, Li Z.  2022.  Disulfide Bond Engineering for Enhancing the Thermostability of the Maltotetraose-Forming Amylase from STB07.. Foods. 11(9)
Barnes JE, Lund-Andersen PK, Patel JSuresh, F Ytreberg M.  2022.  The effect of mutations on binding interactions between the SARS-CoV-2 receptor binding domain and neutralizing antibodies B38 and CB6.. Sci Rep. 12(1):18819.
Gisonno RA, Masson T, Ramella NA, Barrera EE, Romanowski V, M Tricerri A.  2022.  Evolutionary and structural constraints influencing apolipoprotein A-I amyloid behavior.. Proteins. 90(1):258-269.
Standley M, Blay V, Guthrie VBeleva, Kim J, Lyman A, Moya A, Karchin R, Camps M.  2022.  Experimental and Analysis of TEM β-Lactamase Adaptive Evolution.. ACS Infect Dis. 8(12):2451-2463.
Zhang B, Lü C, Zhang M, Xu F.  2022.  [Improving the thermal stability of lipase based on multiple computational design strategies].. Sheng Wu Gong Cheng Xue Bao. 38(4):1537-1553.
Beach SS, Hull MKA, F Ytreberg M, Patel JSuresh, Miura TA.  2022.  Molecular Modeling Predicts Novel Antibody Escape Mutations in the Respiratory Syncytial Virus Fusion Glycoprotein.. J Virol. 96(13):e0035322.
Martín M, Brunello FG, Modenutti CP, Nicola JP, Marti MA.  2022.  MotSASi: Functional short linear motifs (SLiMs) prediction based on genomic single nucleotide variants and structural data.. Biochimie. 197:59-73.
Tiberti M, Terkelsen T, Degn K, Beltrame L, Cremers TCanter, da Piedade I, Di Marco M, Maiani E, Papaleo E.  2022.  MutateX: an automated pipeline for in silico saturation mutagenesis of protein structures and structural ensembles.. Brief Bioinform. 23(3)