Biblio

Found 70 results
2018
Anyndita NVeronica M, Dluha N, Rifa'i M, Himmah K, Wahyuningsih MDwi.  2018.  Designing and overproducing a tandem epitope of gp350/220 that shows a potential to become an EBV vaccine.. Heliyon. 4(3):e00564.
Choi Y, Furlon JM, Amos RB, Griswold KE, Bailey-Kellogg C.  2018.  DisruPPI: structure-based computational redesign algorithm for protein binding disruption.. Bioinformatics. 34(13):i245-i253.
Wojciechowski M, Różycki B, Huy PDinh Quoc, Li MSuan, Bayer EA, Cieplak M.  2018.  Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module.. Sci Rep. 8(1):5051.
Blanco JDelgado, Radusky L, Climente-González H, Serrano L.  2018.  FoldX accurate structural protein-DNA binding prediction using PADA1 (Protein Assisted DNA Assembly 1).. Nucleic Acids Res.
Carleton LA, Chakravarthy R, van der Sloot AM, Mnich K, Serrano L, Samali A, Gorman AM.  2018.  Generation of rationally-designed nerve growth factor (NGF) variants with receptor specificity.. Biochem Biophys Res Commun. 495(1):700-705.
Sumbalova L, Stourac J, Martinek T, Bednar D, Damborsky J.  2018.  HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.. Nucleic Acids Res. 46(W1):W356-W362.
Buß O, Muller D, Jager S, Rudat J, Rabe KS.  2018.  Improvement in the Thermostability of a β-Amino Acid Converting ω-Transaminase by Using FoldX.. Chembiochem. 19(4):379-387.
Ang T-F, Salleh ABakar, Normi YM, Leow TChor.  2018.  In silico design of potentially functional artificial metallo-haloalkane dehalogenase containing catalytic zinc.. 3 Biotech. 8(7):314.
Rojas-Rengifo DF, Alvarez-Silva MCamila, Ulloa-Guerrero CP, Nuñez-Velez VLucía, Delgado MDel Pilar, Aguilera SMilena, Castro H, Jaramillo CAlberto, Barrios AFernando G.  2018.  Intramolecular energies of the cytotoxic protein CagA of Helicobacter pylori as a possible descriptor of strains' pathogenicity level.. Comput Biol Chem. 76:17-22.
Yenenler A, Venturini A, Burduroglu HCahit, Sezerman OUğur.  2018.  Investigating the structural properties of the active conformation BTL2 of a lipase from Geobacillus thermocatenulatus in toluene using molecular dynamic simulations and engineering BTL2 via in-silico mutation.. J Mol Model. 24(9):229.
Okumura A, Maruyama K, Shibata M, Kurahashi H, Ishii A, Numoto S, Hirose S, Kawai T, Iso M, Kataoka S et al..  2018.  A patient with a GNAO1 mutation with decreased spontaneous movements, hypotonia, and dystonic features.. Brain Dev.
Goethe M, Gleixner J, Fita I, J Rubi M.  2018.  Prediction of Protein Configurational Entropy (Popcoen).. J Chem Theory Comput. 14(3):1811-1819.
Usmanova DR, Bogatyreva NS, Bernad JAriño, Eremina AA, Gorshkova AA, Kanevskiy GM, Lonishin LR, Meister AV, Yakupova AG, Kondrashov FA et al..  2018.  Self-consistency test reveals systematic bias in programs for prediction change of stability upon mutation.. Bioinformatics.
2017
Gapsys V, de Groot BL.  2017.  Alchemical Free Energy Calculations for Nucleotide Mutations in Protein-DNA Complexes.. J Chem Theory Comput. 13(12):6275-6289.
Tomar JSingh, Peddinti RKrishna.  2017.  A. baumannii histone acetyl transferase Hpa2: optimization of homology modeling, analysis of protein-protein interaction and virtual screening.. J Biomol Struct Dyn. 35(5):1115-1126.
Xiong P, Zhang C, Zheng W, Zhang Y.  2017.  BindProfX: Assessing Mutation-Induced Binding Affinity Change by Protein Interface Profiles with Pseudo-Counts.. J Mol Biol. 429(3):426-434.
Jones BJ, Lim HYee, Huang J, Kazlauskas RJ.  2017.  Comparison of Five Protein Engineering Strategies for Stabilizing an α/β-Hydrolase.. Biochemistry. 56(50):6521-6532.
Kumar V, Rahman S, Choudhry H, Zamzami MA, Jamal MSarwar, Islam A, Ahmad F, Hassan MImtaiyaz.  2017.  Computing disease-linked SOD1 mutations: deciphering protein stability and patient-phenotype relations.. Sci Rep. 7(1):4678.
Li L, Ye Y, Sang P, Yin Y, Hu W, Wang J, Zhang C, Li D, Wan W, Li R et al..  2017.  Effect of R119G Mutation on Human P5CR1 Dynamic Property and Enzymatic Activity.. Biomed Res Int. 2017:4184106.
Nosrati M, Solbak S, Nordesjö O, Nissbeck M, Dourado DFAR, Andersson KG, Housaindokht MReza, Löfblom J, Virtanen A, U Danielson H et al..  2017.  Insights from engineering the Affibody-Fc interaction with a computational-experimental method.. Protein Eng Des Sel. 30(9):593-601.
Carlin DAlexander, Hapig-Ward S, Chan BWayne, Damrau N, Riley M, Caster RW, Bethards B, Siegel JB.  2017.  Thermal stability and kinetic constants for 129 variants of a family 1 glycoside hydrolase reveal that enzyme activity and stability can be separately designed.. PLoS One. 12(5):e0176255.