Biblio

Found 89 results
2019
Yu T-G, Kim H-S, Choi Y.  2019.  B-SIDER: Computational Algorithm for the Design of Complementary β-Sheet Sequences.. J Chem Inf Model. 59(10):4504-4511.
Cui H, Cao H, Cai H, Karl-Erich J, Davari MDolatabadi, Schwaneberg U.  2019.  Computer-assisted Recombination (CompassR) teaches us how to recombine beneficial substitutions from directed evolution campaigns.. Chemistry.
Shang X, Nelson DC.  2019.  Contributions of Net Charge on the PlyC Endolysin CHAP Domain.. Antibiotics (Basel). 8(2)
Fang X, Huang J, Zhang R, Wang F, Zhang Q, Li G, Yan J, Zhang H, Yan Y, Xu L.  2019.  Convolution Neural Network-Based Prediction of Protein Thermostability.. J Chem Inf Model.
Scheps KG, Hasenahuer MA, Parisi G, Targovnik HM, Fornasari MS.  2019.  Curating the gnomAD database: Report of novel variants in the globin-coding genes and bioinformatics analysis.. Hum Mutat.
Zandsalimi F, Hajihassan Z, Hamidi R.  2019.  Denovo designing: a novel signal peptide for tat translocation pathway to transport activin A to the periplasmic space of E. coli.. Biotechnol Lett.
Peng M, Maier M, Esch J, Schug A, Rabe KS.  2019.  Direct coupling analysis improves the identification of beneficial amino acid mutations for the functional thermostabilization of a delicate decarboxylase.. Biol Chem. 400(11):1519-1527.
Delgado J, Radusky LG, Cianferoni D, Serrano L.  2019.  FoldX 5.0: working with RNA, small molecules and a new graphical interface.. Bioinformatics. 35(20):4168-4169.
Reyes-Espinosa F, Juárez-Saldivar A, Palos I, Herrera-Mayorga V, García-Pérez C, Rivera G.  2019.  In Silico Analysis of Homologous Heterodimers of Cruzipain-Chagasin from Structural Models Built by Homology.. Int J Mol Sci. 20(6)
Singh S, Choudhary S, Anand V, Jaswal S, Verma AK, Kumar S, Kaushik JK, Mohanty AK.  2019.  New insights into the catalytic inactivity of mammary gland protein-40, a chitinase-like protein expressed during mammary gland involution.. Mol Biol Rep. 46(2):2243-2257.
Strokach A, Corbi-Verge C, Kim PM.  2019.  Predicting changes in protein stability caused by mutation using sequence-and structure-based methods in a CAGI5 blind challenge.. Hum Mutat. 40(9):1414-1423.
Kueppers F, Andrake MD, Xu Q, Dunbrack RL, Kim J, Sanders CL.  2019.  Protein modeling to assess the pathogenicity of rare variants of SERPINA1 in patients suspected of having Alpha 1 Antitrypsin Deficiency.. BMC Med Genet. 20(1):125.
Blanco JDelgado, Radusky LG, Cianferoni D, Serrano L.  2019.  Protein-assisted RNA fragment docking (RnaX) for modeling RNA-protein interactions using ModelX.. Proc Natl Acad Sci U S A.
2018
Khan NSaba, Verma R, Pradhan D, Nayek A, Bhuyan R, Sahu TKumar, Jain AKumar.  2018.  Analysis of interleukin 23 and 7G10 interactions for computational design of lead antibodies against immune-mediated inflammatory diseases.. J Recept Signal Transduct Res. 38(4):327-334.
Anyndita NVeronica M, Dluha N, Rifa'i M, Himmah K, Wahyuningsih MDwi.  2018.  Designing and overproducing a tandem epitope of gp350/220 that shows a potential to become an EBV vaccine.. Heliyon. 4(3):e00564.
Choi Y, Furlon JM, Amos RB, Griswold KE, Bailey-Kellogg C.  2018.  DisruPPI: structure-based computational redesign algorithm for protein binding disruption.. Bioinformatics. 34(13):i245-i253.
Wojciechowski M, Różycki B, Huy PDinh Quoc, Li MSuan, Bayer EA, Cieplak M.  2018.  Dual binding in cohesin-dockerin complexes: the energy landscape and the role of short, terminal segments of the dockerin module.. Sci Rep. 8(1):5051.
oštarić NŠ, O'Reilly FJ, Giansanti P, Heck AJR, Gavin A-C, van Noort V.  2018.  Effects of Acetylation and Phosphorylation on Subunit Interactions in Three Large Eukaryotic Complexes.. Mol Cell Proteomics. 17(12):2387-2401.
Blanco JDelgado, Radusky L, Climente-González H, Serrano L.  2018.  FoldX accurate structural protein-DNA binding prediction using PADA1 (Protein Assisted DNA Assembly 1).. Nucleic Acids Res.
Buß O, Rudat J, Ochsenreither K.  2018.  FoldX as Protein Engineering Tool: Better Than Random Based Approaches? Comput Struct Biotechnol J. 16:25-33.
Carleton LA, Chakravarthy R, van der Sloot AM, Mnich K, Serrano L, Samali A, Gorman AM.  2018.  Generation of rationally-designed nerve growth factor (NGF) variants with receptor specificity.. Biochem Biophys Res Commun. 495(1):700-705.
Sumbalova L, Stourac J, Martinek T, Bednar D, Damborsky J.  2018.  HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information.. Nucleic Acids Res. 46(W1):W356-W362.
Buß O, Muller D, Jager S, Rudat J, Rabe KS.  2018.  Improvement in the Thermostability of a β-Amino Acid Converting ω-Transaminase by Using FoldX.. Chembiochem. 19(4):379-387.
Ang T-F, Salleh ABakar, Normi YM, Leow TChor.  2018.  In silico design of potentially functional artificial metallo-haloalkane dehalogenase containing catalytic zinc.. 3 Biotech. 8(7):314.
Rojas-Rengifo DF, Alvarez-Silva MCamila, Ulloa-Guerrero CP, Nuñez-Velez VLucía, Delgado MDel Pilar, Aguilera SMilena, Castro H, Jaramillo CAlberto, Barrios AFernando G.  2018.  Intramolecular energies of the cytotoxic protein CagA of Helicobacter pylori as a possible descriptor of strains' pathogenicity level.. Comput Biol Chem. 76:17-22.